standardize: A function to standardize columns in a 2D NumPy array
A function that performs columnbased standardization on a NumPy array.
from mlxtend.preprocessing import standardize
Overview
The result of standardization (or Zscore normalization) is that the features will be rescaled so that they'll have the properties of a standard normal distribution with
and .
where is the mean (average) and is the standard deviation from the mean; standard scores (also called z scores) of the samples are calculated as
Standardizing the features so that they are centered around 0 with a standard deviation of 1 is not only important if we are comparing measurements that have different units, but it is also a general requirement for the optimal performance of many machine learning algorithms.
One family of algorithms that is scaleinvariant encompasses treebased learning algorithms. Let's take the general CART decision tree algorithm. Without going into much depth regarding information gain and impurity measures, we can think of the decision as "is feature x_i >= some_val?" Intuitively, we can see that it really doesn't matter on which scale this feature is (centimeters, Fahrenheit, a standardized scale  it really doesn't matter).
Some examples of algorithms where feature scaling matters are:
 knearest neighbors with an Euclidean distance measure if want all features to contribute equally
 kmeans (see knearest neighbors)
 logistic regression, SVMs, perceptrons, neural networks etc. if you are using gradient descent/ascentbased optimization, otherwise some weights will update much faster than others
 linear discriminant analysis, principal component analysis, kernel principal component analysis since you want to find directions of maximizing the variance (under the constraints that those directions/eigenvectors/principal components are orthogonal); you want to have features on the same scale since you'd emphasize variables on "larger measurement scales" more.
There are many more cases than I can possibly list here ... I always recommend you to think about the algorithm and what it's doing, and then it typically becomes obvious whether we want to scale your features or not.
In addition, we'd also want to think about whether we want to "standardize" or "normalize" (here: scaling to [0, 1] range) our data. Some algorithms assume that our data is centered at 0. For example, if we initialize the weights of a small multilayer perceptron with tanh activation units to 0 or small random values centered around zero, we want to update the model weights "equally." As a rule of thumb I'd say: When in doubt, just standardize the data, it shouldn't hurt.
Example 1  Standardize a Pandas DataFrame
import pandas as pd
s1 = pd.Series([1, 2, 3, 4, 5, 6], index=(range(6)))
s2 = pd.Series([10, 9, 8, 7, 6, 5], index=(range(6)))
df = pd.DataFrame(s1, columns=['s1'])
df['s2'] = s2
df
s1  s2  

0  1  10 
1  2  9 
2  3  8 
3  4  7 
4  5  6 
5  6  5 
from mlxtend.preprocessing import standardize
standardize(df, columns=['s1', 's2'])
s1  s2  

0  1.46385  1.46385 
1  0.87831  0.87831 
2  0.29277  0.29277 
3  0.29277  0.29277 
4  0.87831  0.87831 
5  1.46385  1.46385 
Example 2  Standardize a NumPy Array
import numpy as np
X = np.array([[1, 10], [2, 9], [3, 8], [4, 7], [5, 6], [6, 5]])
X
array([[ 1, 10],
[ 2, 9],
[ 3, 8],
[ 4, 7],
[ 5, 6],
[ 6, 5]])
from mlxtend.preprocessing import standardize
standardize(X, columns=[0, 1])
array([[1.46385011, 1.46385011],
[0.87831007, 0.87831007],
[0.29277002, 0.29277002],
[ 0.29277002, 0.29277002],
[ 0.87831007, 0.87831007],
[ 1.46385011, 1.46385011]])
Example 3  Reusing parameters
In machine learning contexts, it is desired to reuse the parameters that have been obtained from a training set to scale new, future data (including the independent test set). By setting return_params=True
, the standardize
function returns a second object, a parameter dictionary containing the column means and standard deviations that can be reused by feeding it to the params
parameter upon function call.
import numpy as np
from mlxtend.preprocessing import standardize
X_train = np.array([[1, 10], [4, 7], [3, 8]])
X_test = np.array([[1, 2], [3, 4], [5, 6]])
X_train_std, params = standardize(X_train,
columns=[0, 1],
return_params=True)
X_train_std
array([[1.33630621, 1.33630621],
[ 1.06904497, 1.06904497],
[ 0.26726124, 0.26726124]])
params
{'avgs': array([ 2.66666667, 8.33333333]),
'stds': array([ 1.24721913, 1.24721913])}
X_test_std = standardize(X_test,
columns=[0, 1],
params=params)
X_test_std
array([[1.33630621, 5.0779636 ],
[ 0.26726124, 3.47439614],
[ 1.87082869, 1.87082869]])
API
standardize(array, columns=None, ddof=0, return_params=False, params=None)
Standardize columns in pandas DataFrames.
Parameters

array
: pandas DataFrame or NumPy ndarray, shape = [n_rows, n_columns]. 
columns
: arraylike, shape = [n_columns] (default: None)Arraylike with column names, e.g., ['col1', 'col2', ...] or column indices [0, 2, 4, ...] If None, standardizes all columns.

ddof
: int (default: 0)Delta Degrees of Freedom. The divisor used in calculations is N  ddof, where N represents the number of elements.

return_params
: dict (default: False)If set to True, a dictionary is returned in addition to the standardized array. The parameter dictionary contains the column means ('avgs') and standard deviations ('stds') of the individual columns.

params
: dict (default: None)A dictionary with column means and standard deviations as returned by the
standardize
function ifreturn_params
was set to True. If aparams
dictionary is provided, thestandardize
function will use these instead of computing them from the current array.
Notes
If all values in a given column are the same, these values are all
set to 0.0
. The standard deviation in the parameters
dictionary
is consequently set to 1.0
to avoid dividing by zero.
Returns

df_new
: pandas DataFrame object.Copy of the array or DataFrame with standardized columns.
Examples
For usage examples, please see http://rasbt.github.io/mlxtend/user_guide/preprocessing/standardize/